Technical Report BCF-SIB 2007-1

The main content of this technical report has been published in Wirapati et al. (2008) Breast Cancer Research 10:R65, along with some modifications to make it more clinically oriented. However, it does contain some additional analyses (although not necessarily relevant to the main point of the published paper). Please cite the published paper if the referred material is already included there. Otherwise, you may refer to this techrep as

Table of module scores and subtypes

The table of per-patient module score and subtype classifications can be found here. (This is a plain tab-delimited text that can be opened easily from a spreadsheet program.)

Descriptions of the columns:

dataset             dataset identifier
id                  patient id (as in the original public data)
estrogen            estogen-related module score
17q                 17q-related module score
proliferation       proliferation-related module score
p(ER-/HER2-)        posterior probability of being in ER-/HER2- cluster
p(HER2+)            posterior probability of being in HER2+ cluster
p(ER+/HER2-)        posterior probability of being in ER+/HER2- cluster
subtype             1: ER-/HER2-, 2: HER2+, 3: ER+/HER2-, 0: not carcinoma
Notes:

Curated Data

The curated data in R .rda files can be found here.


Last modified: 2013/06/19 14:43