Budinska,E. (2008) Bio-mathematical modeling of tumor genome profiling data. Dissertation thesis. Masaryk University, Brno, 118 pp (in English) [.pdf]

Budinska,E. (2004) Statistical approach to molecular cytogenetic analysis of genetic pathological states. Diploma dissertation. Masaryk University, Brno,118 pp (in Slovak) [.pdf]

JOURNAL ARTICLES

TECHNICAL NOTES

Greplova K., Pilny R., Budinska E., Dubska L., Lakomy R., Vyzula R., Vojtesek B., Valik D. (2009) When one chip is not enough: Augmenting the validity of SELDI-TOF proteomic profiles of clinical specimens. Lab Chip. 9(7):1014-7.[.pdf]

METHODS ON ARRAY CGH ANALYSIS

Budinska,E., Gelnarova,E. & Schimek,M.G. (2009) MSMAD: A computationally efficient method for the analysis of noisy array CGH data. Bioinformatics 25(6):703-13[PUBMED]

Picard,F., Lebarbier,E., Budinska,E., Radvanyi,F. and Robin,S. (2008) A statistical framework for the joint segmentation of multiple array CGH profiles. Submitted. [.pdf]

REVIEWS ON METHODS

Budinska E., Schimek M.G. (2008) State of the art in the analysis of data from arrayCGH experiments. In Proceedings of 4th International Summer School on Computational Biology. Brno: Masaryk University.[.pdf]

Budinská,E., Jarkovský,J. (2006) Metody detekce alterovaných oblastí DNA z dat CGH arrays. Klinická onkologie, Supplementum, BRNO : ApS BRNO, spol. s r. o, 368-372. (in Czech)

Ihnatova,I., Budinska, E. (2008) Methods of meta-analysis of microarrays. In Proceedings of 4th International Summer School on Computational Biology. Brno: Masaryk University. In press.

APPLIED ANALYSIS

Brozkova,K, Budinska,E., Bouchal,P., Hernychova,L., Knoflickova,D., Valik,D., Vyzula,R., Vojtesek,B., Nenutil,R.(2008) Surface-enhanced laser desorption/ionization time-of-flight proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression. Breast Cancer Research, 10:R48 [.pdf]

Sebkova,A., Karasova,D., Crhanova,M., Budinska,E., Rychlik,I. (2008) aro mutations in Salmonella enterica cause defects in cell wall and outer membrane integrity. Journal of Bacteriology, American Society for Microbiology, May 2008, 190, 3155-3160. [.pdf]

Vranova,V., Necesalova,E., Kuglik,P., Cejpek,P., Pesakova,M., Budinska,E., Relichová,J., Veselská,R. (2007) Screening of genomic imbalances in glioblastoma multiforme using high-resolution comparative genomic hybridization. Oncology Reports, 17, 457-464. [.pdf]

Matiasovicova,J, Adams,P., Barrow,P.A., Hradecka,H., Malcova,M., Karpiskova,R., Budinska,E., Pilousova,L. (2007) Identification of putative ancestors of the multidrug-resistant Salmonella enterica serovar typhimurium DT104 clone harboring the Salmonella genomic island 1. Archives of microbiology, 187, 415-424. [.pdf]