Bioinformatics Core Facility
Swiss Institute of Bioinformatics
Quartier Sorge - Batiment Genopode, CH-1015 Lausanne, Switzerland
Eva Budinska

+41 (0) 788 750 630
+41 (0) 21 692 40 97
Eva.Budinska@isb-sib.ch
JOURNAL ARTICLES

METHODS

2011

Picard,F., Lebarbier, E., Budinska, E., Robin, S. (2011) Joint segmentation of multivariate Gaussian processes using mixed linear models. Computational Statistics & Data Analysis. Volume 55, Issue 2, 1 February 2011, Pages 1160-1170.[.pdf]

2009

Budinska,E., Gelnarova,E. & Schimek,M.G. (2009) MSMAD: A computationally efficient method for the analysis of noisy array CGH data. Bioinformatics 25(6):703-13[PUBMED]

TECHNICAL NOTES

2009

Greplova K., Pilny R., Budinska E., Dubska L., Lakomy R., Vyzula R., Vojtesek B., Valik D. (2009) When one chip is not enough: Augmenting the validity of SELDI-TOF proteomic profiles of clinical specimens. Lab Chip. 9(7):1014-7.[.pdf]

REVIEWS

2008

Budinska E., Schimek M.G. (2008) State of the art in the analysis of data from arrayCGH experiments. In Proceedings of 4th International Summer School on Computational Biology. Brno: Masaryk University.[.pdf]

Budinska,E., Jarkovsky,J. (2006) Metody detekce alterovaných oblasti DNA z dat CGH arrays. Klinicka onkologie, Supplementum, BRNO : ApS BRNO, spol. s r. o, 368-372. [in Czech]

APPLIED ANALYSIS

2010

Vasikova A, Belickova M, Budinska E, Cermak J.(2010) A distinct expression of various gene subsets in CD34+cells from patients with early and advanced myelodysplastic syndrome. Leukemia Research Vol. 34 Issue 12 Pages: 1566-1572

Bouchal P, Struharova I, Budinska E,Sedo O, Vyhlidalova T, Zdrahal Z, van Spanning R, Kucera I. (2010) Unraveling an FNR based regulatory circuit in Paracoccus denitrificans using a proteomics-based approach. Biochimica et Biophysica Acta- Proteins and Proteomics. Volume: 1804 Issue: 6 Pages: 1350-1358

Jedlickova H, Hlubinka M, Pavlik T, Semradova V, Budinska E, Vlasin Z. (2010) Bullous pemphigoid and internal diseases - A case-control study. EUROPEAN JOURNAL OF DERMATOLOGY Volume: 20 Issue: 1 Pages: 96-101

2009

Beszedesova, N., Budinska, E. , Skorkovska, S. (2009) Functional integrity of neural retina in 2. type diabetics Ceska a slovenska oftalmologie, 65, 4, od s. 124-30, 7 s. ISSN 1211-9059. [in Slovak]

Lakomy, R., Greplova, K., Pilny, R., Budinska, E., Valik, D., Poprach, A., Nemecek, R., Vyzula, R. (2009) Profiles of Low-Molecular Proteome Spectrum Obtained through SELDI-TOF Mass Spectrometry in the Sera of Patients with Metastatic Malignant Melanoma: Pilot Study Klinicka onkologie, Brno, 22, 5, od s. 228-232, 5 s. ISSN 0862-495X. [in Czech]

Jakubcova, R., Foukal, J., Budinska, E. , Smardova, L.(2009) Contrast-enhanced ultrasound in differential diagnosis of lymphadenopathy - first experiences Ceska radiologie, Praha : Galen, 63, 1, od s. 48-55, 8 s. ISSN 1210-7883. [in Czech]

2008

Brozkova,K, Budinska,E., Bouchal,P., Hernychova,L., Knoflickova,D., Valik,D., Vyzula,R., Vojtesek,B., Nenutil,R.(2008) Surface-enhanced laser desorption/ionization time-of-flight proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression. Breast Cancer Research, 10:R48 [.pdf]

Sebkova,A., Karasova,D., Crhanova,M., Budinska,E., Rychlik,I. (2008) aro mutations in Salmonella enterica cause defects in cell wall and outer membrane integrity. Journal of Bacteriology, American Society for Microbiology, May 2008, 190, 3155-3160. [.pdf]

2007

Vranova,V., Necesalova,E., Kuglik,P., Cejpek,P., Pesakova,M., Budinska,E., Relichová,J., Veselská,R. (2007) Screening of genomic imbalances in glioblastoma multiforme using high-resolution comparative genomic hybridization. Oncology Reports, 17, 457-464. [.pdf]

Matiasovicova,J, Adams,P., Barrow,P.A., Hradecka,H., Malcova,M., Karpiskova,R., Budinska,E., Pilousova,L. (2007) Identification of putative ancestors of the multidrug-resistant Salmonella enterica serovar typhimurium DT104 clone harboring the Salmonella genomic island 1. Archives of microbiology, 187, 415-424. [.pdf]

THESES

Budinska,E. (2008) Bio-mathematical modeling of tumor genome profiling data. Dissertation thesis. Masaryk University, Brno, 118 pp (in English) [.pdf]

Budinska,E. (2004) Statistical approach to molecular cytogenetic analysis of genetic pathological states. Diploma dissertation. Masaryk University, Brno,118 pp (in Slovak) [.pdf]