Class Schedule
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| Date |
Lecture |
TP |
Somm. |
Topic |
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| 24 Sep |
Lec 1 |
TP 1 |
Som 1 |
Molecular biology and technology background; image analysis basics |
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| 1 Oct |
Lec 2 |
TP 2 |
Som 2 |
EDA (scatter plots, MA plots, boxplots); local regression, normalization |
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| 8 Oct |
Lec 3 |
No TP |
Som 3 |
Short oligo arrays;
Bayesian estimation, DE genes;
Visit to DNA array Affymetrix facility
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| 15 Oct |
Lec 4 |
TP 4 |
Som 4 |
Robust regression; Affy QC
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| 22 Oct |
Lec 5 |
TP 5 |
Som 5 |
Experimental design I
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| 29 Oct |
Lec 6 |
TP 6 |
Som 6 |
Hypothesis testing, ROC curves; multiple hypothesis testing |
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| 5 Nov |
Lec 7 |
TP 7 |
Som 7 |
Cluster analysis
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| 12 Nov |
Lec 8 |
TP 8 |
Som 8 |
Permutation testing; Review |
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| 19 Nov |
Lec 9 |
(TP 8) |
Som 9 |
Annotation, Gene ontology; Gene set testing |
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| 26 Nov |
Lec 10 |
TP 10 |
Som 10 |
Experimental design II |
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| 3 Dec |
Lec 11 |
TP 11 |
Som 11 |
Classification |
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| 10 Dec |
Lec 12 |
Exam |
Som 12 |
Miscellaneous topics; Review
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